STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES24271.1Uncharacterized iron-regulated membrane protein. (375 aa)    
Predicted Functional Partners:
SES24255.1
Protein of unknown function.
 
  
  0.863
SES24285.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.857
SES24241.1
Outer membrane cobalamin receptor protein.
     0.769
SES01597.1
Iron complex outermembrane recepter protein.
 
    0.668
SEQ93442.1
Iron complex outermembrane recepter protein.
 
    0.629
SER48949.1
Iron complex outermembrane recepter protein.
 
    0.593
SES30996.1
Protein of unknown function.
 
    0.531
SER23849.1
Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.514
SER73924.1
Iron complex outermembrane recepter protein.
 
    0.479
Your Current Organism:
Pedobacter rhizosphaerae
NCBI taxonomy Id: 390241
Other names: DSM 18610, KACC 14938, NBRC 107690, P. rhizosphaerae, Pedobacter rhizosphaerae Kwon et al. 2011, strain 01-96
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