STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES30234.1Ribonuclease G. (516 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.991
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 
 0.922
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
  
 0.707
SES30253.1
DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family.
  
  
 0.673
SER56253.1
HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
 
 
 0.620
SEQ81971.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
    
 
 0.504
SER01872.1
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 
 0.504
SER40309.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
 
 0.504
SER37250.1
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 
 0.504
SES05353.1
ATP-dependent RNA helicase RhlE.
    
 
 0.504
Your Current Organism:
Pedobacter rhizosphaerae
NCBI taxonomy Id: 390241
Other names: DSM 18610, KACC 14938, NBRC 107690, P. rhizosphaerae, Pedobacter rhizosphaerae Kwon et al. 2011, strain 01-96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.