STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES30816.1Ferritin-like metal-binding protein YciE. (184 aa)    
Predicted Functional Partners:
SES30806.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.849
SES21850.1
Bifunctional non-homologous end joining protein LigD.
 
     0.629
SER61068.1
Mn-containing catalase.
    0.612
SER19914.1
Putative membrane protein.
 
    0.490
SER45446.1
General stress protein 26.
  
     0.485
SER96993.1
Putative membrane protein.
 
    0.482
SER20894.1
General stress protein 26.
  
     0.476
SES30827.1
Hypothetical protein.
       0.468
SEQ90770.1
Low affinity Fe/Cu permease.
  
    0.454
SER93699.1
Conserved hypothetical protein.
    0.449
Your Current Organism:
Pedobacter rhizosphaerae
NCBI taxonomy Id: 390241
Other names: DSM 18610, KACC 14938, NBRC 107690, P. rhizosphaerae, Pedobacter rhizosphaerae Kwon et al. 2011, strain 01-96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.