STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD38629.1Four helix bundle protein. (118 aa)    
Predicted Functional Partners:
SDE43203.1
Four helix bundle protein.
  
     0.604
SDD94792.1
Four helix bundle protein.
  
     0.596
SDC53506.1
Four helix bundle protein.
  
     0.572
SDE41386.1
Four helix bundle protein.
  
     0.551
SDE06718.1
Four helix bundle protein.
  
     0.541
SDC81350.1
Four helix bundle protein.
  
     0.441
SDD53741.1
Four helix bundle protein.
  
     0.434
SDD38519.1
Peptidase family M23.
       0.400
SDD38554.1
Hemolysin III.
       0.400
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.400
Your Current Organism:
Pedobacter soli
NCBI taxonomy Id: 390242
Other names: DSM 18609, KACC 14939, NBRC 107691, P. soli, Pedobacter soli Kwon et al. 2011, strain 15-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.