STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD99929.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (314 aa)    
Predicted Functional Partners:
SDD99954.1
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.848
SDD99996.1
Ribosome-associated protein.
       0.848
SDE00039.1
L-proline dehydrogenase.
  
    0.728
SDD17208.1
Phytoene/squalene synthetase.
  
 0.662
SDD33291.1
Protein of unknown function.
   
 0.598
SDD07776.1
Prepilin-type processing-associated H-X9-DG domain-containing protein.
   
 0.590
SDD39949.1
Methyltransferase domain-containing protein.
    
 0.568
SDD99851.1
Hypothetical protein.
       0.510
SDD99893.1
Hypothetical protein.
       0.510
SDE37877.1
Nucleoside-diphosphate-sugar epimerase.
  
  0.495
Your Current Organism:
Pedobacter soli
NCBI taxonomy Id: 390242
Other names: DSM 18609, KACC 14939, NBRC 107691, P. soli, Pedobacter soli Kwon et al. 2011, strain 15-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.