STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR38473.1Protein of unknown function. (58 aa)    
Predicted Functional Partners:
SFR38465.1
Ribbon-helix-helix domain-containing protein.
       0.869
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.869
SFR38488.1
Hypothetical protein.
       0.687
SFR46880.1
Hypothetical protein.
  
     0.532
SFR61287.1
Hypothetical protein.
  
     0.476
SFR51356.1
Hypothetical protein.
  
     0.473
SFR38494.1
Chromate transporter.
       0.472
SFR55302.1
Hypothetical protein.
  
     0.450
SFR59707.1
Hypothetical protein.
  
     0.448
SFR38502.1
Hypothetical protein.
       0.445
Your Current Organism:
Yoonia tamlensis
NCBI taxonomy Id: 390270
Other names: DSM 26879, JCM 14020, KCTC 12722, Loktanella tamlensis, Loktanella tamlensis Lee 2012, Y. tamlensis, strain SSW-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.