SFR38770.1 protein (Yoonia tamlensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFR38770.1

Serine phosphatase RsbU, regulator of sigma subunit. (401 aa)

Predicted Functional Partners:

SFR38762.1

0.993

SFR38754.1

0.987

SFR38727.1

0.931

SFR38748.1

0.919

SFR38739.1

0.915

SFR43872.1

0.914

SFR38731.1

0.913

SFR51686.1

0.863

SFR54918.1

0.838

SFR36244.1

0.823

Your Current Organism:

Yoonia tamlensis

NCBI taxonomy Id: 390270
Other names: DSM 26879, JCM 14020, KCTC 12722, Loktanella tamlensis, Loktanella tamlensis Lee 2012, Y. tamlensis, strain SSW-35

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFR36244.1	SFR38754.1	SAMN04488005_0942	SAMN04488005_1276	Flagellar motor switch protein FliM.	Serine/threonine-protein kinase RsbW.	0.702
SFR36244.1	SFR38762.1	SAMN04488005_0942	SAMN04488005_1277	Flagellar motor switch protein FliM.	Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.655
SFR36244.1	SFR38770.1	SAMN04488005_0942	SAMN04488005_1278	Flagellar motor switch protein FliM.	Serine phosphatase RsbU, regulator of sigma subunit.	0.823
SFR36244.1	SFR51686.1	SAMN04488005_0942	SAMN04488005_2462	Flagellar motor switch protein FliM.	Rod binding protein.	0.912
SFR38727.1	SFR38731.1	SAMN04488005_1272	SAMN04488005_1273	Protein of unknown function.	Cellulose synthase (UDP-forming).	0.957
SFR38727.1	SFR38739.1	SAMN04488005_1272	SAMN04488005_1274	Protein of unknown function.	Surface polysaccharide O-acyltransferase, integral membrane enzyme.	0.955
SFR38727.1	SFR38748.1	SAMN04488005_1272	SAMN04488005_1275	Protein of unknown function.	Protein of unknown function.	0.842
SFR38727.1	SFR38754.1	SAMN04488005_1272	SAMN04488005_1276	Protein of unknown function.	Serine/threonine-protein kinase RsbW.	0.783
SFR38727.1	SFR38762.1	SAMN04488005_1272	SAMN04488005_1277	Protein of unknown function.	Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.901
SFR38727.1	SFR38770.1	SAMN04488005_1272	SAMN04488005_1278	Protein of unknown function.	Serine phosphatase RsbU, regulator of sigma subunit.	0.931
SFR38731.1	SFR38727.1	SAMN04488005_1273	SAMN04488005_1272	Cellulose synthase (UDP-forming).	Protein of unknown function.	0.957
SFR38731.1	SFR38739.1	SAMN04488005_1273	SAMN04488005_1274	Cellulose synthase (UDP-forming).	Surface polysaccharide O-acyltransferase, integral membrane enzyme.	0.949
SFR38731.1	SFR38748.1	SAMN04488005_1273	SAMN04488005_1275	Cellulose synthase (UDP-forming).	Protein of unknown function.	0.957
SFR38731.1	SFR38754.1	SAMN04488005_1273	SAMN04488005_1276	Cellulose synthase (UDP-forming).	Serine/threonine-protein kinase RsbW.	0.805
SFR38731.1	SFR38762.1	SAMN04488005_1273	SAMN04488005_1277	Cellulose synthase (UDP-forming).	Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.908
SFR38731.1	SFR38770.1	SAMN04488005_1273	SAMN04488005_1278	Cellulose synthase (UDP-forming).	Serine phosphatase RsbU, regulator of sigma subunit.	0.913
SFR38731.1	SFR54918.1	SAMN04488005_1273	SAMN04488005_2800	Cellulose synthase (UDP-forming).	Diguanylate cyclase/phosphodiesterase.	0.519
SFR38739.1	SFR38727.1	SAMN04488005_1274	SAMN04488005_1272	Surface polysaccharide O-acyltransferase, integral membrane enzyme.	Protein of unknown function.	0.955
SFR38739.1	SFR38731.1	SAMN04488005_1274	SAMN04488005_1273	Surface polysaccharide O-acyltransferase, integral membrane enzyme.	Cellulose synthase (UDP-forming).	0.949
SFR38739.1	SFR38748.1	SAMN04488005_1274	SAMN04488005_1275	Surface polysaccharide O-acyltransferase, integral membrane enzyme.	Protein of unknown function.	0.955