Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR43119.1 | SFR43134.1 | SAMN04488005_1864 | SAMN04488005_1866 | Pyruvate, orthophosphate dikinase. | Hypothetical protein. | 0.755 |
SFR43119.1 | SFR43150.1 | SAMN04488005_1864 | SAMN04488005_1868 | Pyruvate, orthophosphate dikinase. | Putative peptidoglycan binding domain-containing protein. | 0.490 |
SFR43119.1 | glyQ | SAMN04488005_1864 | SAMN04488005_1867 | Pyruvate, orthophosphate dikinase. | glycyl-tRNA synthetase alpha chain. | 0.744 |
SFR43119.1 | glyS | SAMN04488005_1864 | SAMN04488005_1865 | Pyruvate, orthophosphate dikinase. | glycyl-tRNA synthetase beta chain. | 0.756 |
SFR43119.1 | guaA | SAMN04488005_1864 | SAMN04488005_1447 | Pyruvate, orthophosphate dikinase. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.455 |
SFR43134.1 | SFR43119.1 | SAMN04488005_1866 | SAMN04488005_1864 | Hypothetical protein. | Pyruvate, orthophosphate dikinase. | 0.755 |
SFR43134.1 | SFR43150.1 | SAMN04488005_1866 | SAMN04488005_1868 | Hypothetical protein. | Putative peptidoglycan binding domain-containing protein. | 0.871 |
SFR43134.1 | alaS | SAMN04488005_1866 | SAMN04488005_1202 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.551 |
SFR43134.1 | glyQ | SAMN04488005_1866 | SAMN04488005_1867 | Hypothetical protein. | glycyl-tRNA synthetase alpha chain. | 0.998 |
SFR43134.1 | glyS | SAMN04488005_1866 | SAMN04488005_1865 | Hypothetical protein. | glycyl-tRNA synthetase beta chain. | 0.949 |
SFR43134.1 | ileS | SAMN04488005_1866 | SAMN04488005_0484 | Hypothetical protein. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.643 |
SFR43150.1 | SFR43119.1 | SAMN04488005_1868 | SAMN04488005_1864 | Putative peptidoglycan binding domain-containing protein. | Pyruvate, orthophosphate dikinase. | 0.490 |
SFR43150.1 | SFR43134.1 | SAMN04488005_1868 | SAMN04488005_1866 | Putative peptidoglycan binding domain-containing protein. | Hypothetical protein. | 0.871 |
SFR43150.1 | alaS | SAMN04488005_1868 | SAMN04488005_1202 | Putative peptidoglycan binding domain-containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.670 |
SFR43150.1 | glyQ | SAMN04488005_1868 | SAMN04488005_1867 | Putative peptidoglycan binding domain-containing protein. | glycyl-tRNA synthetase alpha chain. | 0.715 |
SFR43150.1 | glyS | SAMN04488005_1868 | SAMN04488005_1865 | Putative peptidoglycan binding domain-containing protein. | glycyl-tRNA synthetase beta chain. | 0.713 |
alaS | SFR43134.1 | SAMN04488005_1202 | SAMN04488005_1866 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Hypothetical protein. | 0.551 |
alaS | SFR43150.1 | SAMN04488005_1202 | SAMN04488005_1868 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Putative peptidoglycan binding domain-containing protein. | 0.670 |
alaS | glyQ | SAMN04488005_1202 | SAMN04488005_1867 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | glycyl-tRNA synthetase alpha chain. | 0.748 |
alaS | glyS | SAMN04488005_1202 | SAMN04488005_1865 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | glycyl-tRNA synthetase beta chain. | 0.551 |
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