STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR45651.1RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (165 aa)    
Predicted Functional Partners:
SFR45659.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
 
 
 0.929
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.824
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.798
SFR33032.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.694
SFR43903.1
Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.687
SFR43278.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.675
SFR47548.1
anti-ECFsigma factor, ChrR.
  
 
 0.654
SFR45640.1
Predicted lipoprotein with conserved Yx(FWY)xxD motif.
 
     0.642
SFR34136.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.638
SFR45274.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.600
Your Current Organism:
Yoonia tamlensis
NCBI taxonomy Id: 390270
Other names: DSM 26879, JCM 14020, KCTC 12722, Loktanella tamlensis, Loktanella tamlensis Lee 2012, Y. tamlensis, strain SSW-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.