STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR47445.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
SFR47452.1
Luciferase-type oxidoreductase, BA3436 family.
 
     0.802
SFR47460.1
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.794
SFR51321.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.639
SFR47467.1
Alcohol dehydrogenase GroES-like domain-containing protein.
 
     0.521
SFR47377.1
Luciferase-type oxidoreductase, BA3436 family.
  
     0.514
SFR52426.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.453
SFR35927.1
Transcriptional regulator, AraC family.
  
    0.427
SFR61236.1
Transcriptional regulator, TetR family.
  
 
   0.414
SFR47437.1
Phage integrase family protein.
       0.400
Your Current Organism:
Yoonia tamlensis
NCBI taxonomy Id: 390270
Other names: DSM 26879, JCM 14020, KCTC 12722, Loktanella tamlensis, Loktanella tamlensis Lee 2012, Y. tamlensis, strain SSW-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.