STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSR42_07300tRNA-Leu; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (1430 aa)    
Predicted Functional Partners:
OKY53803.1
Outer membrane insertion signal; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
OKY53785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.432
OKY53802.1
Outer membrane insertion signal; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
OKY53760.1
Peptidase M48 Ste24p; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.410
OKY53804.1
Outer membrane insertion signal; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.404
OKY54592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.401
Your Current Organism:
Megasphaera cerevisiae
NCBI taxonomy Id: 39029
Other names: ATCC 43254, DSM 20462, JCM 6130, M. cerevisiae, VTT E-85230, strain PAT 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.