STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKY53273.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
OKY53024.1
Nitrogenase molybdenum-iron protein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.928
OKY53082.1
Fe-only nitrogenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.925
OKY53271.1
Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.837
OKY53272.1
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.816
OKY53025.1
Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.812
OKY53023.1
Nitrogenase molybdenum-iron protein alpha chain; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.807
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
  
 0.806
OKY53020.1
Nitrogenase iron protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.806
OKY53080.1
Nitrogenase iron-iron protein, alpha chain; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.794
ribBA
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.620
Your Current Organism:
Megasphaera cerevisiae
NCBI taxonomy Id: 39029
Other names: ATCC 43254, DSM 20462, JCM 6130, M. cerevisiae, VTT E-85230, strain PAT 1
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