STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ldb0035ABC transporter, ATP-binding protein. (212 aa)    
Predicted Functional Partners:
Ldb0036
ABC transporter, permease protein.
  
 0.978
Ldb0031
ABC transporter, ATP-binding/permease protein.
     
0.934
Ldb1289
ABC transporter, ATP-binding / permease protein.
 
     
0.899
Ldb1353
ABC transporter, ATP-binding/permease protein.
 
     
0.899
oppD
Oligopeptide ABC transporter, ATP-binding protein; Cf Peltoniemi et al., 2002. Arch Microbiol. 177:457-67; Belongs to the ABC transporter superfamily.
     
0.899
Ldb2047
ABC transporter, ATP-binding/permease protein.
 
     
0.899
Ldb1906
Putative sugar kinase (fragment).
 
     
0.843
cbiQ
Putative cobalt ABC transporter, permease protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
      0.834
Ldb0037
Hypothetical membrane protein.
       0.773
Ldb0974
ABC transporter, ATP-binding protein.
    
0.629
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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