Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ldb0098Conserved hypothetical membrane protein. (182 aa)    
Predicted Functional Partners:
Ldb0097
6 Protein of unknown function, without similarity to other proteins.
 
     0.956
cbiQ
Putative cobalt ABC transporter, permease protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.948
Ldb0099
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the Cob(I)alamin adenosyltransferase family.
 
     0.900
rtpR
Ribonucleoside-triphosphate reductase; Belongs to the class II ribonucleoside-triphosphate reductase family.
 
     0.890
cbiO2
Putative cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.871
cbiO1
Putative cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
   0.809
oppBII
Oligopeptide ABC transporter, permease protein.
  
 
 0.628
oppB
Oligopeptide ABC transporter, permease protein; Cf Peltoniemi et al., 2002. Arch Microbiol. 177:457-67.
  
 
 0.628
oppCII
Oligopeptide ABC transporter, permease protein.
  
 
 0.606
oppC
Oligopeptide ABC transporter, permease protein; Cf Peltoniemi et al., 2002. Arch Microbiol. 177:457-67.
  
 
 0.606
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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