Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ldb0252Amino acid ABC transporter, permease protein. (230 aa)    
Predicted Functional Partners:
Ldb0254
Amino acid ABC transporter, substrate binding protein.
 
 0.998
Ldb0251
Amino Acid ABC transporter, permease protein.
  
 
0.980
Ldb0253
Amino acid ABC transporter, ATP-binding protein.
 
 
 0.979
Ldb2198
Glutamine ABC transporter, substrate binding / permease protein.
  
0.838
Ldb1298
Amino acid ABC transporter, ATP-binding protein.
 
 
 0.747
Ldb0168
Amino Acid ABC transporter, ATP-binding protein.
 
 
 0.733
Ldb2199
Glutamine ABC transporter, ATP-binding protein.
 
 
 0.731
glnQ
Glutamine ABC transporter, ATP-binding protein.
 
 
 0.710
Ldb2037
ABC transporter, permease protein.
  
 
 0.538
Ldb0169
Amino acid ABC transporter, substrate binding / permease protein.
 
0.525
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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