Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ldb0302ABC transporter, ATP-binding/permease protein. (536 aa)    
Predicted Functional Partners:
Ldb0301
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
    0.834
Ldb2047
ABC transporter, ATP-binding/permease protein.
 
    
0.750
Ldb1149
Putative transcriptional regulator (MarR family) (fragment).
 
0.718
Ldb0331
ABC transporter, ATP-binding protein.
 
 0.633
Ldb1448
Putative permease.
 
     0.589
Ldb1289
ABC transporter, ATP-binding / permease protein.
  
 
 0.495
Ldb1732
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.462
Ldb0164
Conserved hypothetical protein; Contains an HNH endonuclease domain.
  
     0.457
Ldb0159
Putative transcriptional regulator.
  
     0.427
Ldb0775
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.426
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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