Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ldb0330ABC transporter, permease protein. (266 aa)    
Predicted Functional Partners:
Ldb0331
ABC transporter, ATP-binding protein.
 
  
 0.976
Ldb0329
6 Protein of unknown function, without similarity to other proteins.
       0.774
Ldb0301
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
  
 0.693
Ldb0158
6 Protein of unknown function, without similarity to other proteins.
  
  
 0.657
Ldb0783
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
  
 0.646
Ldb1039
Putative ABC transporter, ATP-binding protein (fragment).
  
  
 0.646
Ldb1699
Putative ribokinase (fragment).
 
   
 0.642
Ldb2160
Conserved hypothetical membrane protein.
  
  
 0.602
Ldb2095
5.1 Protein of unknown function similar to other proteins from the same organism.
 
  
 0.578
Ldb1527
ABC transporter, ATP-binding protein.
  
  
 0.546
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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