STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ldb0441Aromatic amino acid aminotransferase. (393 aa)    
Predicted Functional Partners:
secY2
Putative preprotein translocase, SecY subunit (fragment).
  
  
 
0.908
Ldb0442
Conserved hypothetical membrane protein.
 
     0.800
ask
Aspartate kinase; Belongs to the aspartokinase family.
 
 0.708
asnB1
Asparagine synthase.
  
 
 0.557
aspA
Putative transcriptionnal regulator (DeoR family) (fragment).
    
 0.539
asnA
Aspartate-ammonia ligase.
     
 0.514
Ldb0313
6 Protein of unknown function, without similarity to other proteins.
  
  
 0.494
Ldb1707
Acetaldehyde dehydrogenase.
  
 
 0.491
Ldb1350
Homoserine dehydrogenase.
 
 
 0.438
asd
Aspartate semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.430
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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