STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ldb0449Transcriptional regulator (GntR family). (233 aa)    
Predicted Functional Partners:
scrB
Sucrose-6-phosphate hydrolase (fragment).
  
  
 0.841
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.774
pepV
X-His dipeptidase.
   
 0.589
Ldb0448
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
       0.578
ccpA,
Catabolite control protein A (CcpA).
  
   
 0.566
Ldb0447
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
       0.554
tarB
Putative CDP-glycerol:glycerophosphate glycerophosphotransferase.
       0.466
Ldb0451
Putative polysaccharide repeat unit transport protein; Polysaccharide Transport (PST) Family.
       0.466
Ldb1801
PTS system, mannose-specific enzyme IIAB component.
  
  
 0.419
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
       0.418
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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