STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
copZCation transporting P-type ATPase (probable metal transporter) (fragment). (75 aa)    
Predicted Functional Partners:
Ldb0481
6 Protein of unknown function, without similarity to other proteins.
 
   
 0.929
Ldb0482
Transcriptional regulator (Crp family).
 
    0.902
Ldb1239
Multidrug efflux protein (fragment); Similar to ISL5 transposase.
 
 
 0.797
Ldb0658
Putative penicillin binding protein (fragment).
  
  
 0.779
Ldb2158
Cation transporting P-type ATPase (probable metal transporter).
  
 
 0.771
Ldb0660
Cation transporting P-type ATPase (probable copper transporter).
  
 
 0.722
Ldb0183
Transcriptional regulator (Crp family).
 
    0.705
ppiB
Aromatic amino acid aminotransferase (fragment); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
   0.520
Ldb0226
Cation:Proton Antiporter.
  
  
 0.478
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
   0.446
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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