STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ldb0672Amino-acid transporter. (543 aa)    
Predicted Functional Partners:
Ldb0596
Putative dehydrogenase.
 
 
 
 0.605
Ldb0546
Conserved hypothetical protein (Cystathionine beta-lyase family).
 
     0.579
brnQ
Branched-chain amino acid transport system carrier protein; Component of the transport system for branched-chain amino acids.
     
 0.504
pepD2
Dipeptidase.
 
  
  0.472
Ldb0313
6 Protein of unknown function, without similarity to other proteins.
   
 
 0.456
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.446
pepD1
Dipeptidase.
 
  
  0.440
scrB
Sucrose-6-phosphate hydrolase (fragment).
     
 0.434
Ldb0674
Putative esterase (alpha-beta hydrolase superfamily).
       0.424
Ldb1707
Acetaldehyde dehydrogenase.
  
 
 0.423
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.