STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ldb0877Two-component system, response regulator. (222 aa)    
Predicted Functional Partners:
Ldb0878
Two-component system, sensor histidine kinase.
 
 
 0.994
Ldb1492
Two-component system, sensor histidine kinase.
 
 0.929
Ldb0876
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
     0.890
Ldb0689
Two-component system, sensor histidine kinase.
 
 0.865
phoR
Phosphate regulon response regulator (fragment).
 
 0.840
Ldb2045
Two-component system, sensor histidine kinase.
 
 0.836
Ldb0136
Two-component system, sensor histidine kinase.
 
 
 0.744
Ldb1285
6 Protein of unknown function, without similarity to other proteins.
  
 
 0.539
rpoA
DNA-directed RNA polymerase, alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.507
rpoC
DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.501
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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