STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ldb0967ABC transporter, ATP binding protein (fragment). (218 aa)    
Predicted Functional Partners:
Ldb0968
6 Protein of unknown function, without similarity to other proteins.
 
     0.737
Ldb1713
Hypothetical membrane protein.
  
     0.660
Ldb1930
Conserved hypothetical protein (fragment).
 
     0.591
Ldb1553
6 Protein of unknown function, without similarity to other proteins.
 
     0.531
Ldb1987
Putative transposase.
  
     0.476
lacA
Conserved hypothetical protein (fragment); Similar to ISL5 transposase, part of ISL4-5; Belongs to the 'phage' integrase family.
 
    0.442
Ldb0667
6 Protein of unknown function, without similarity to other proteins.
 
     0.421
cshA
ATP-dependent helicase (DEAD/DEAH box family); DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
  
 0.403
Ldb0541
ATP-dependent helicase (DEAD/DEAH box family).
  
 0.403
Ldb1608
ATP-dependent helicase (DEAD/DEAH box family).
  
 0.403
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
Server load: low (20%) [HD]