STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
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[Homology]
Score
addBATP-dependent deoxyribonuclease subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily. (1179 aa)    
Predicted Functional Partners:
addA
ATP-dependent deoxyribonuclease subunit A; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily.
 
 
 0.998
dinG
ATP-dependent DNA helicase DinG; 3'-5' exonuclease.
 
   
 0.836
Ldb1003
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
     0.788
dnaD
DNA replication protein DnaD; Initiation of chromosome replication (primosome component).
 
     0.747
recJ
RecJ, single-stranded DNA specific exonuclease.
     
 0.698
Ldb2057
Conserved hypothetical membrane protein.
 
     0.695
Ldb1219
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
     0.694
Ldb0733
Conserved hypothetical membrane protein.
  
     0.692
Ldb0775
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.691
Ldb0181
Putative transcriptional regulator (TetR family).
  
     0.689
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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