Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ldb1089ABC transporter, permease protein. (624 aa)    
Predicted Functional Partners:
Ldb1088
ABC transporter, ATP-binding protein.
 
 
 0.969
Ldb1119
ABC transporter, ATP-binding protein.
 
 
 0.900
Ldb0014
ABC transporter, ATP-binding/permease protein.
 
 
 0.562
Ldb1828
ABC transporter, ATP-binding protein.
  
 
 0.526
Ldb0364
Putative ribosome-associated heat shock protein.
   
    0.514
Ldb2069
ABC transporter, ATP-binding protein.
  
 
 0.503
Ldb2142
ABC transporter, ATP-binding/permease protein.
  
 
 0.503
Ldb2161
Conserved hypothetical membrane protein.
 
     0.448
dxs
Conserved hypothetical protein (fragment).
  
     0.443
Ldb1087
6 Protein of unknown function, without similarity to other proteins.
       0.429
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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