Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ldb0586 | Ldb1499 | Ldb0586 | Ldb1499 | Pseudouridylate synthase. | GTP-binding protein. | 0.540 |
| Ldb0586 | Ldb1678 | Ldb0586 | Ldb1678 | Pseudouridylate synthase. | tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.648 |
| Ldb0586 | engB | Ldb0586 | Ldb0779 | Pseudouridylate synthase. | Conserved hypothetical protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.577 |
| Ldb0586 | rplK | Ldb0586 | Ldb1666 | Pseudouridylate synthase. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.576 |
| Ldb0586 | rplM | Ldb0586 | Ldb0428 | Pseudouridylate synthase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.589 |
| Ldb1499 | Ldb0586 | Ldb1499 | Ldb0586 | GTP-binding protein. | Pseudouridylate synthase. | 0.540 |
| Ldb1499 | Ldb1543 | Ldb1499 | Ldb1543 | GTP-binding protein. | Pseudouridylate synthase. | 0.541 |
| Ldb1499 | Ldb1678 | Ldb1499 | Ldb1678 | GTP-binding protein. | tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.678 |
| Ldb1499 | engB | Ldb1499 | Ldb0779 | GTP-binding protein. | Conserved hypothetical protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.640 |
| Ldb1499 | rplK | Ldb1499 | Ldb1666 | GTP-binding protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.581 |
| Ldb1499 | rplM | Ldb1499 | Ldb0428 | GTP-binding protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.578 |
| Ldb1499 | rplT | Ldb1499 | Ldb1500 | GTP-binding protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.872 |
| Ldb1543 | Ldb1499 | Ldb1543 | Ldb1499 | Pseudouridylate synthase. | GTP-binding protein. | 0.541 |
| Ldb1543 | Ldb1678 | Ldb1543 | Ldb1678 | Pseudouridylate synthase. | tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.635 |
| Ldb1543 | engB | Ldb1543 | Ldb0779 | Pseudouridylate synthase. | Conserved hypothetical protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.577 |
| Ldb1543 | rplK | Ldb1543 | Ldb1666 | Pseudouridylate synthase. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.576 |
| Ldb1543 | rplM | Ldb1543 | Ldb0428 | Pseudouridylate synthase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.589 |
| Ldb1677 | Ldb1678 | Ldb1677 | Ldb1678 | Putative RNA polymerase sigma factor. | tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.674 |
| Ldb1677 | cysS | Ldb1677 | Ldb1680 | Putative RNA polymerase sigma factor. | Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.613 |
| Ldb1677 | mrnC | Ldb1677 | Ldb1679 | Putative RNA polymerase sigma factor. | Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.681 |
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