STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ldb1886Putative transcriptional regulator (Xre family). (286 aa)    
Predicted Functional Partners:
Ldb1885
Putative esterase.
     
 0.775
Ldb1906
Putative sugar kinase (fragment).
  
     0.499
Ldb1884
Conserved hypothetical membrane protein.
     
 0.494
Ldb1883
Putative acetyltransferase.
  
  
 0.482
Ldb0913
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.447
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase (fragment).
  
     0.425
mscL
Putative hydrolase (HAD superfamily) (fragment); Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
      
 0.402
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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