Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ldb1930Conserved hypothetical protein (fragment). (235 aa)    
Predicted Functional Partners:
Ldb1553
6 Protein of unknown function, without similarity to other proteins.
 
     0.746
Ldb1713
Hypothetical membrane protein.
 
     0.738
Ldb1745
6 Protein of unknown function, without similarity to other proteins.
  
     0.721
prtB
Proteinase precursor; Belongs to the peptidase S8 family.
  
     0.701
Ldb1297
6 Protein of unknown function, without similarity to other proteins.
  
     0.689
lacA
Conserved hypothetical protein (fragment); Similar to ISL5 transposase, part of ISL4-5; Belongs to the 'phage' integrase family.
  
     0.676
Ldb1987
Putative transposase.
  
     0.655
Ldb0968
6 Protein of unknown function, without similarity to other proteins.
  
     0.622
Ldb0967
ABC transporter, ATP binding protein (fragment).
 
     0.591
Ldb0913
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.579
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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