Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ldb2038ABC transporter, ATP-binding protein. (217 aa)    
Predicted Functional Partners:
Ldb2037
ABC transporter, permease protein.
 
 
 0.999
Ldb0675
Substrate binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.995
Ldb2039
Hydrolase (HAD superfamily).
       0.697
Ldb1592
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.606
Ldb0974
ABC transporter, ATP-binding protein.
   
 0.552
Ldb1173
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.538
Ldb0314
Putative transcriptional regulator (MarR family).
  
  
 0.497
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.494
Ldb2036
Putative lactate oxidase (fragment).
       0.488
Ldb0111
ABC transporter, ATP-binding/permease protein.
 
     0.462
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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