Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ldb2046Two-component system, response regulator. (228 aa)    
Predicted Functional Partners:
Ldb2045
Two-component system, sensor histidine kinase.
 
 0.985
Ldb0689
Two-component system, sensor histidine kinase.
 
 0.924
Ldb1492
Two-component system, sensor histidine kinase.
 
 0.918
Ldb0136
Two-component system, sensor histidine kinase.
 
 0.834
phoR
Phosphate regulon response regulator (fragment).
 
 0.793
Ldb0878
Two-component system, sensor histidine kinase.
 
 
 0.785
murE
UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily.
     
 0.737
racD
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
       0.704
Ldb1285
6 Protein of unknown function, without similarity to other proteins.
  
 
 0.539
ribC
Riboflavin kinase / FAD synthase; Belongs to the ribF family.
 
   
 0.536
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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