Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ldb2092Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms. (166 aa)    
Predicted Functional Partners:
Ldb0720
Putative ATPase.
  
   0.911
Ldb2093
Putative protein tyrosine/serine phosphatase.
       0.773
Ldb1046
6 Protein of unknown function, without similarity to other proteins.
 
    
 0.708
cmk
Cytidylate kinase.
      0.680
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.634
Ldb2094
ABC transporter, ATP-binding/permease protein.
   
   0.577
Ldb2095
5.1 Protein of unknown function similar to other proteins from the same organism.
       0.554
Ldb1742
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
   
   0.533
Ldb2091
Conserved hypothetical membrane protein.
       0.532
rplX
50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.509
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: L. delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081
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