STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gvpAGas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. (77 aa)    
Predicted Functional Partners:
SFQ98554.1
Gas vesicle protein K.
 
   
 0.879
SFQ98577.1
Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.875
SFQ98549.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.873
SFQ98592.1
Gas vesicle protein GvpN.
 
   
 0.872
SFQ98572.1
Gas vesicle protein G.
 
   
 0.870
SFQ98564.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.859
SFQ98568.1
Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.857
SFQ98559.1
Gas vesicle synthesis protein GvpL/GvpF.
 
     0.837
SFQ98586.1
HSP20 family protein.
 
     0.803
SFQ98582.1
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
 
     0.787
Your Current Organism:
Desulfallas geothermicus
NCBI taxonomy Id: 39060
Other names: D. geothermicus, DSM 3669, Desulfotomaculum geothermicum, NBRC 112753, strain BSD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.