STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR01579.1Transcriptional regulator, XRE family with cupin sensor. (183 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.824
SFR12345.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.717
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.632
SFQ94798.1
Kynurenine formamidase.
  
    0.589
SFR05231.1
Kynurenine formamidase.
  
    0.589
SFR01583.1
NADH-quinone oxidoreductase subunit E.
       0.573
SFR02921.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
  
 0.559
SFR12355.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.549
SFR01586.1
NADH-quinone oxidoreductase subunit F.
       0.513
SFQ98289.1
Two-component system, response regulator, stage 0 sporulation protein F.
    
  0.476
Your Current Organism:
Desulfallas geothermicus
NCBI taxonomy Id: 39060
Other names: D. geothermicus, DSM 3669, Desulfotomaculum geothermicum, NBRC 112753, strain BSD
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