Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR14134.1 | SFR14139.1 | SAMN05660706_13013 | SAMN05660706_13014 | Hypothetical protein. | ST7 protein. | 0.580 |
SFR14139.1 | SFR14134.1 | SAMN05660706_13014 | SAMN05660706_13013 | ST7 protein. | Hypothetical protein. | 0.580 |
SFR14139.1 | SFR15856.1 | SAMN05660706_13014 | SAMN05660706_13720 | ST7 protein. | CRISPR-associated protein, Csh2 family. | 0.701 |
SFR14139.1 | SFR15859.1 | SAMN05660706_13014 | SAMN05660706_13721 | ST7 protein. | CRISPR-associated protein Cas5h. | 0.753 |
SFR14139.1 | SFR15867.1 | SAMN05660706_13014 | SAMN05660706_13722 | ST7 protein. | CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD. | 0.730 |
SFR14139.1 | SFR15926.1 | SAMN05660706_13014 | SAMN05660706_13733 | ST7 protein. | Helix-turn-helix domain of resolvase. | 0.519 |
SFR14139.1 | SFR16856.1 | SAMN05660706_13014 | SAMN05660706_14220 | ST7 protein. | Homeodomain-like domain-containing protein. | 0.568 |
SFR14139.1 | SFR18873.1 | SAMN05660706_13014 | SAMN05660706_1723 | ST7 protein. | Hypothetical protein. | 0.602 |
SFR14139.1 | ftsY | SAMN05660706_13014 | SAMN05660706_10673 | ST7 protein. | Fused signal recognition particle receptor; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.506 |
SFR14139.1 | secE | SAMN05660706_13014 | SAMN05660706_14414 | ST7 protein. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.508 |
SFR14139.1 | secY | SAMN05660706_13014 | SAMN05660706_11123 | ST7 protein. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.506 |
SFR15856.1 | SFR14139.1 | SAMN05660706_13720 | SAMN05660706_13014 | CRISPR-associated protein, Csh2 family. | ST7 protein. | 0.701 |
SFR15856.1 | SFR15859.1 | SAMN05660706_13720 | SAMN05660706_13721 | CRISPR-associated protein, Csh2 family. | CRISPR-associated protein Cas5h. | 0.956 |
SFR15856.1 | SFR15867.1 | SAMN05660706_13720 | SAMN05660706_13722 | CRISPR-associated protein, Csh2 family. | CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD. | 0.952 |
SFR15856.1 | SFR15926.1 | SAMN05660706_13720 | SAMN05660706_13733 | CRISPR-associated protein, Csh2 family. | Helix-turn-helix domain of resolvase. | 0.423 |
SFR15859.1 | SFR14139.1 | SAMN05660706_13721 | SAMN05660706_13014 | CRISPR-associated protein Cas5h. | ST7 protein. | 0.753 |
SFR15859.1 | SFR15856.1 | SAMN05660706_13721 | SAMN05660706_13720 | CRISPR-associated protein Cas5h. | CRISPR-associated protein, Csh2 family. | 0.956 |
SFR15859.1 | SFR15867.1 | SAMN05660706_13721 | SAMN05660706_13722 | CRISPR-associated protein Cas5h. | CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD. | 0.992 |
SFR15859.1 | SFR15926.1 | SAMN05660706_13721 | SAMN05660706_13733 | CRISPR-associated protein Cas5h. | Helix-turn-helix domain of resolvase. | 0.608 |
SFR15859.1 | SFR16856.1 | SAMN05660706_13721 | SAMN05660706_14220 | CRISPR-associated protein Cas5h. | Homeodomain-like domain-containing protein. | 0.520 |
page 1 of 3