STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE30236.1Protein of unknown function. (178 aa)    
Predicted Functional Partners:
SEE55564.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.932
SEE58028.1
Outer membrane protein TolC.
 
   0.851
SEE57968.1
Cu(I)/Ag(I) efflux system membrane protein CusA/SilA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.826
SEE30279.1
Protein of unknown function.
 
     0.680
SEF03265.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.536
SEE22948.1
Putative ABC transport system permease protein.
   
   0.516
SEE23006.1
Putative ABC transport system permease protein.
   
   0.516
SEE57823.1
Putative ABC transport system permease protein.
   
   0.516
SEF08553.1
Putative ABC transport system permease protein.
   
   0.516
SEE29708.1
Heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.505
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.