STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE35461.1Protein SCO1/2. (221 aa)    
Predicted Functional Partners:
SEE24158.1
Cytochrome c oxidase subunit 2.
 
 
 0.944
SEE23381.1
Cytochrome c oxidase subunit 3.
 
  
 0.711
SEE91734.1
Thiol-disulfide isomerase or thioredoxin.
  
   0.705
SEE74361.1
Thiol-disulfide isomerase or thioredoxin.
  
   0.694
SEE23175.1
Putative membrane protein.
 
    0.688
SEE94068.1
Thiol-disulfide isomerase or thioredoxin.
  
   0.688
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.670
SEE24107.1
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.668
SEF11651.1
Thiol-disulfide isomerase or thioredoxin.
   
   0.646
SEE25360.1
Protein SCO1/2.
  
     0.595
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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