STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE37653.1RNA polymerase sigma-70 factor, ECF subfamily. (180 aa)    
Predicted Functional Partners:
SEE37695.1
Hypothetical protein.
  
    0.776
SEF12542.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SEE85516.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.773
SEE37620.1
Hypothetical protein.
       0.757
SEF07884.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.744
SEF08385.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.674
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.647
SEE50576.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.641
SEE95262.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 
 0.639
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.630
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.