STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE41147.1Sodium/proton antiporter, CPA1 family. (627 aa)    
Predicted Functional Partners:
SEF06580.1
Trk system potassium uptake protein TrkH.
  
 
 0.902
SEE41052.1
Kef-type K+ transport system, membrane component KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
0.663
SEE41106.1
Transporter, CPA2 family.
   
 
 0.652
SEF04581.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.618
SEE78233.1
Signal transduction histidine kinase.
   
 
 0.595
SEE68422.1
Ca2+-transporting ATPase.
  
 
 0.484
SEE94922.1
Ca2+-transporting ATPase.
  
 
 0.484
SEE94958.1
Ca2+-transporting ATPase.
  
 
 0.484
SEE83506.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.481
SEE26533.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.452
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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