STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE42781.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (367 aa)    
Predicted Functional Partners:
SEE42983.1
Arylsulfatase A.
 
   0.964
SEE43434.1
Uncharacterized sulfatase.
 
   0.890
SEE42858.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
    0.790
SEE42821.1
Alpha/beta hydrolase family protein.
       0.773
SEE42903.1
Hypothetical protein.
       0.773
SEE42942.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
       0.736
SEE43023.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
       0.483
SEE20945.1
Protein involved in gliding motility GldN.
 
   
 0.474
SEF09295.1
Dimethylhistidine N-methyltransferase.
  
 
 0.469
SEE42738.1
MFS transporter, SP family, xylose:H+ symportor; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.467
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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