STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE68666.1Transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (566 aa)    
Predicted Functional Partners:
SEE68696.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
     0.900
SEE78233.1
Signal transduction histidine kinase.
  
 
 0.877
SEF03953.1
Uncharacterized conserved protein YbbC, DUF1343 family.
      0.861
SEE95713.1
Signal transduction histidine kinase.
  
 
 0.795
SEE82049.1
L-proline dehydrogenase.
 
  
 0.785
SEE33363.1
PAS domain S-box-containing protein.
   
 
 0.759
SEE70369.1
Signal transduction histidine kinase.
   
 
 0.759
SEE68636.1
Protein of unknown function.
  
     0.757
SEF00565.1
Protein of unknown function.
  
     0.689
SEE58121.1
Protein of unknown function.
  
     0.650
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.