STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE77913.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (393 aa)    
Predicted Functional Partners:
SEE77878.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
 
 0.986
SEE77949.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 0.974
SEE77840.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
 0.950
SEF13466.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.886
SEE39430.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.791
SEF12143.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
 
 0.760
SEE78013.1
Capsular exopolysaccharide family.
  
  
 0.708
SEE71142.1
Predicted dehydrogenase.
 
 0.674
SEE77980.1
Polysaccharide export outer membrane protein.
       0.628
SEE39215.1
dTDP-glucose 4,6-dehydratase.
 
 
  0.594
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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