STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE78078.1Capsule assembly protein Wzi. (446 aa)    
Predicted Functional Partners:
SEF05704.1
Magnesium chelatase subunit I.
  
 0.834
SEE49487.1
Por secretion system C-terminal sorting domain-containing protein.
 
     0.666
SEE78047.1
Protein-tyrosine phosphatase.
 
     0.615
SEE98530.1
Glycosyltransferase like family 2.
  
     0.611
SEF03835.1
Outer membrane transport energization protein TonB.
  
     0.599
SEF09316.1
TonB family C-terminal domain-containing protein.
  
     0.588
SEF11063.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.576
SEE76402.1
Hypothetical protein.
 
     0.560
SEE95920.1
Hypothetical protein.
  
     0.535
SEE22048.1
Long-chain fatty acid transport protein.
  
     0.479
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.