STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE83563.12'-5' RNA ligase. (178 aa)    
Predicted Functional Partners:
SEE83593.1
Cation efflux family protein.
       0.732
SEE54594.1
Hypothetical protein.
 
    0.707
SEE83532.1
Protein of unknown function.
       0.620
SEF04581.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
     
 0.554
SEE83619.1
Predicted hydrolase of the alpha/beta superfamily.
       0.543
SEE83647.1
Protein of unknown function.
       0.536
SEE83674.1
Interferon-induced transmembrane protein.
       0.536
SEE83700.1
Uncharacterized membrane protein.
       0.470
SEE83724.1
Hypothetical protein.
       0.461
SEE83506.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
    0.449
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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