STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE85860.1Peptidase family M23. (562 aa)    
Predicted Functional Partners:
SEE85882.1
TonB-dependent Receptor Plug Domain.
       0.814
SEE39552.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.671
SEE48019.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.652
SEE85835.1
Hypothetical protein.
 
     0.613
SEE85810.1
Cell division protein ZapA.
       0.566
SEF05404.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.529
SEF10360.1
Hypothetical protein.
  
     0.510
SEF10051.1
Protein of unknown function.
  
     0.495
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.483
SEE78494.1
Family of unknown function.
  
     0.456
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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