STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE95827.1Hypothetical protein. (641 aa)    
Predicted Functional Partners:
SEE78233.1
Signal transduction histidine kinase.
  
 0.972
SEE73282.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.929
SEE95262.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.920
SEE95713.1
Signal transduction histidine kinase.
  
 0.883
SEF07107.1
Two component transcriptional regulator, LuxR family.
 
  0.868
SEE33363.1
PAS domain S-box-containing protein.
   
 0.866
SEE70369.1
Signal transduction histidine kinase.
   
 0.866
SEE76337.1
Regulatory protein, luxR family.
 
  0.789
SEE96088.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.744
SEE78163.1
Regulatory protein, luxR family.
 
  0.738
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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