STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE91408.1WbqC-like protein family protein. (211 aa)    
Predicted Functional Partners:
SEE91424.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.837
SEE91462.1
Hypothetical protein.
 
     0.798
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.696
SEE91503.1
Chromosome partitioning protein.
       0.696
SEE91481.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
       0.693
SEE43628.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.663
SEE91262.1
Tetratricopeptide repeat-containing protein.
  
     0.652
SEE52955.1
uroporphyrinogen-III synthase.
  
     0.623
SEE74547.1
Thiol:disulfide interchange protein DsbD.
  
     0.547
SEF10360.1
Hypothetical protein.
  
     0.539
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.