STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE91584.1Septum formation initiator. (85 aa)    
Predicted Functional Partners:
SEF06947.1
Cell division protein FtsQ.
   
 
 0.982
SEE91562.1
Heterodimeric methylmalonyl-CoA mutase small subunit.
       0.743
SEE85810.1
Cell division protein ZapA.
  
   
 0.673
SEE91604.1
Uridine kinase.
       0.655
SEE91545.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
       0.645
SEE21145.1
Arginase family enzyme; Belongs to the arginase family.
  
     0.599
SEF10187.1
Hypothetical protein.
  
     0.471
SEE91626.1
Cytochrome c, mono-and diheme variants.
       0.466
SEE91645.1
Quinoprotein glucose dehydrogenase.
       0.466
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.448
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.