STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE92167.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
SEE92182.1
Hypothetical protein.
 
  
 0.965
SEE92150.1
Helix-turn-helix domain-containing protein.
 
    0.953
SEE92199.1
Endonuclease/Exonuclease/phosphatase family protein.
 
     0.924
SEE92128.1
RteC protein.
 
     0.848
SEE92374.1
Hypothetical protein.
 
     0.749
SEE92392.1
Protein of unknown function.
 
     0.737
SEE92589.1
Hypothetical protein.
 
     0.735
SEE92569.1
TraM recognition site of TraD and TraG.
 
     0.733
SEE92607.1
Hypothetical protein.
  
     0.723
SEE92315.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.721
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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