STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF00768.1N-Dimethylarginine dimethylaminohydrolase. (303 aa)    
Predicted Functional Partners:
SEF00754.1
Hypothetical protein.
 
     0.877
SEF03370.1
Amino-acid N-acetyltransferase.
    
  0.666
SEF07875.1
Hypothetical protein.
  
     0.572
SEF01694.1
Hypothetical protein.
  
  
  0.541
SEF01709.1
Glycosyl transferase family 2.
  
     0.535
SEF08232.1
Hypothetical protein.
  
     0.532
SEE71644.1
Hypothetical protein.
  
     0.509
SEF00418.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.498
SEE71972.1
Glutamate synthase domain-containing protein 2; Belongs to the glutamate synthase family.
  
 
  0.492
SEE21974.1
GDSL-like Lipase/Acylhydrolase.
  
     0.480
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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