STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF04513.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
SEF06138.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.720
SEF01521.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.691
SEE90855.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
    0.617
SEF06130.1
WD40-like Beta Propeller Repeat.
  
     0.558
SEF04504.1
Hypothetical protein.
       0.550
SEE51201.1
Protein involved in gliding motility GldD.
  
     0.510
SEE92931.1
5,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family.
  
  
  0.493
SEF01534.1
Peptidoglycan-associated lipoprotein.
  
     0.475
SEF07319.1
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
    
  0.435
SEF07329.1
O-acetylhomoserine sulfhydrylase.
    
  0.435
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.